Commands:
View > Ion Group
View > Normalization Ion Group
View > Info Text
View > Data Graph
View > Molecular References
Chromatogram > Chromatogram Map
Chromatogram > Precursors
Chromatogram > Chromatogram Group > New
Chromatogram > Chromatogram Group > Alignment
Sequences > Sequence View
Sequences > Database Group > Database Group View
Sequences > Protein Group > Protein Group View
- Sequences > Create Protein Group View
- Sequences > Create Molecular Markers
- For All Ion Fragmentation Data:
- MS/MS Chromatogram > Marker Views > Fragment Ion Group
- MS/MS Chromatogram > Marker Views > Marker Group
Views of data objects in the collection can be generated by pressing the Add View button of the data object in list view of the data collection.
Views can as well be generated by the menu commands:
- View > Ion Group: Ion group view - this command creates a new, empty ion group in the library and the collection.
- View > Normalization Ion Group: Normalization Ion group view - this command creates a new, empty normalization ion group in the collection. A Normalization Ion Group is used for defining a set of ions that are used to normalize the intensity of a group of chromatograms.
- View > Info Text: Text view - displays chromatogram or Data Collection associated text.
- View > Data Graph: Data Graph view - used to display and edit graphically an arbitrary set of data - like the retention time relationship of two aligned chromatograms.
- View > Molecular References: Molecular Reference view - view to define amino acid based molecular references.
- Chromatogram > Chromatogram Map: Chromatogram Map - a two dimensional display of a chromatogram
- Chromatogram > Precursors: Precursor view - a list of all fragmented precursors of a chromatogram
- Chromatogram > Chromatogram Group > New: Chromatogram group - for collecting related chromatograms
- Chromatogram > Chromatogram Group > Alignment: Chromatogram Alignment - for displaying and editing chromatogram alignments
- Sequences > Sequence View: Sequence view - to display a single amino acid sequences and their fragment masses
- Sequences > Database Group > Database Group View: Database Group View - to display a collection of database search results.
- Sequences > Protein Group > Protein Group View: Protein group view - to display a collection of amino acid sequences grouped by proteins.
- Sequences > Create Protein Group View: Creates from a Database Search Result a Protein Group View. Protein Groups can be edited Database Search Results only in a limited way.
- Sequences > Create Molecular Markers: Creates a Molecular Marker Group from a Database Search whose peptides are linked to fragment spectra.
- MS/MS Chromatogram > Marker Views > Fragment Ion Group: Creates a Fragment Ion Group to trace their simultaneous appearance in an All Ion Fragmentation chromatogram
- MS/MS Chromatogram > Marker Views > Marker Group: Creates a Molecular Marker Group to trace the simultaneous appearance of intact ions m/z values and their associated fragments in an All Ion Fragmentation chromatogram.
Of the many views in the Arcadiate window the main view is the one with a white background. Some of the view commands relate to primary data objects. They are only active when the main view allows to determine this primary data object.
Nearly all views support zooming by pinch gestures.
Many views are generated automatically by a variety of activities in other views.