Views offer many ways to manipulate the displayed data. It is recommended to activate the Assistant panel via the command Window > Open Assistant to take full advantage of them.

General Commands
Explains activities which are not dependent on any specific view.

Spectrum View
Use a Spectrum view to explore mass spectrometric data in detail.

Sequence View
Use a Sequence view to work with amino acid sequences.

Protein View
  • Protein Group View
  • Peptide View
The Protein view displays amino acid sequences grouped by proteins. It can be used to edit sequences and quantify peptides and proteins.

Precursor View
Use the Precursor view to access all fragment spectra and filter them.

Database View
  • Database Protein View
  • Database Peptide View
The Database Search Result view displays all identified proteins and their peptides. It can be used to quantify peptides and proteins.

Database Group View
  • Database Group Protein View
  • Database Group Peptide View
The Database Group View is used to combine several databases for quantifying protein based on peptides identified in several chromatographic runs.

Ion Group View
Use an Ion Group view to determine the ion volume of specific chromatographic ions.

Normalization Ion Group View
Use an Normalization Ion Group view to normalize the ion intensities of chromatogram(s) via a set of norm-ions.

Info Text View
Use an Info Text view to store and access information of a data collection or a specific chromatogram.

Chromatogram Group View
Use a Chromatogram Group view to follow ion volumes of specific ions over several similar chromatograms.

Chromatogram Alignment View
Use a Chromatogram Alignment view to view and edit the alignment of two chromatograms.

Chromatogram Map View
Use a Chromatogram Map view get an overview of an entire chromatogram.

Molecular References View
Use a Molecular Reference View to describe the isotopic labeling of peptides in a chromatogram.

Data Graph View
Use a Data Graph View to display and edit (x,y) data in a graphical way, for instance the intensity normalization function of a chromatogram.

Molecular Marker Group View
  • Marker Group View
  • Marker Group Set View
Use a Molecular Marker Group view to define molecular marker for detection in an All Ion Fragmentation (MSE) chromatogram.

Fragment Ion Group View
Use a Fragment Ion Group view to define fragment masses for simultaneous detection in an All Ion Fragmentation (MSE) chromatogram.